STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3865CHAD domain protein. (538 aa)    
Predicted Functional Partners:
DM40_3866
Mop: molybdenum-pterin binding domain protein.
 
     0.697
DM40_4461
BNR repeat-like domain protein.
  
     0.670
DM40_739
Hypothetical protein.
  
     0.603
DM40_4796
Putative cheA signal transduction histidine kinase.
  
     0.541
DM40_3957
Putative transmembrane protein.
  
     0.529
DM40_1125
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
  
     0.525
DM40_910
Hypothetical protein.
  
     0.524
DM40_3694
Hypothetical protein.
  
     0.520
DM40_1232
CYTH domain protein.
 
     0.490
DM40_3864
Tautomerase enzyme family protein.
       0.485
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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