STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3870PAP2 superfamily protein. (232 aa)    
Predicted Functional Partners:
DM40_292
Copper resistance D family protein.
  
     0.720
DM40_1563
Polysaccharide biosynthesis family protein.
 
    0.692
DM40_4874
Cytochrome P450 family protein.
  
 0.614
gspL
typeII_sec_gspL: type II secretion system protein L.
  
     0.614
DM40_2604
Tetratricopeptide repeat family protein.
 
   
 0.599
DM40_271
O-Antigen ligase family protein.
  
     0.593
DM40_2340
LTXXQ motif family protein.
  
     0.565
DM40_1584
Hypothetical protein.
  
     0.550
DM40_2662
Hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.542
DM40_2395
Hypothetical protein.
  
     0.541
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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