STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ohrRTranscriptional regulator OhrR. (150 aa)    
Predicted Functional Partners:
DM40_3873
Organ_hyd_perox: peroxiredoxin, Ohr subfamily protein.
    0.791
DM40_4898
marR family protein.
  
     0.771
DM40_826
marR family protein.
  
     0.765
DM40_3650
marR family protein.
  
     0.682
nagE
PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component.
     
 0.578
DM40_5635
Organ_hyd_perox: peroxiredoxin, Ohr subfamily protein.
    0.553
thrB
thrB_alt: homoserine kinase; Belongs to the pseudomonas-type ThrB family.
  
    0.506
DM40_3769
marR family protein.
  
     0.493
DM40_3875
Putative membrane protein.
       0.492
DM40_2328
Organ_hyd_perox: peroxiredoxin, Ohr subfamily protein.
 
  
 0.444
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.