STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3949Hypothetical protein. (417 aa)    
Predicted Functional Partners:
DM40_3715
OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein.
 
 
    0.766
gltD
Glutamate synthase, NADH/NADPH, small subunit domain protein.
  
  
 0.600
fadH
NADH:flavin oxidoreductase / NADH oxidase family protein.
  
  
 0.600
DM40_5428
FAD binding domain protein.
  
  
 0.600
DM40_4372
BON domain protein.
  
     0.589
DM40_3948
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
       0.512
hoxN
High-affinity nickel transport protein; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.478
DM40_292
Copper resistance D family protein.
  
     0.442
hoxN-2
High-affinity nickel transport protein.
  
     0.434
DM40_3950
N(G),N(G)-dimethylarginine dimethylaminohydrolase.
       0.432
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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