STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_397ATP-dependent protease La domain protein. (211 aa)    
Predicted Functional Partners:
DM40_461
thiF family protein.
    
 0.904
DM40_4415
Metallo-beta-lactamase superfamily protein.
     
 0.829
DM40_2077
Calcineurin-like phosphoesterase family protein.
    
 0.822
DM40_5444
Calcineurin-like phosphoesterase family protein.
    
 0.822
DM40_850
SET domain protein.
  
 
  0.795
DM40_4035
Putative sctD, secretion-associated protein.
     
 0.780
DM40_4817
type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family.
     
 0.780
DM40_396
P-loop ATPase family protein; Displays ATPase and GTPase activities.
       0.719
hprK
HPr(Ser) kinase/phosphatase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr).
     
 0.591
DM40_184
Transglutaminase-like superfamily protein.
 
     0.493
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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