STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yihY-2yihY_not_rbn: YihY family inner membrane domain protein. (310 aa)    
Predicted Functional Partners:
DM40_3985
Molybdopterin oxidoreductase Fe4S4 domain protein.
       0.527
DM40_3986
formate-DH-alph: formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
    0.455
DM40_4543
Sodium/calcium exchanger family protein.
  
    0.438
DM40_5700
Eukaryotic DNA topoisomerase I, catalytic core family protein.
  
    0.438
DM40_5174
Sodium/hydrogen exchanger family protein.
 
     0.424
fdxH
FDH-beta: formate dehydrogenase, beta subunit.
       0.423
DM40_3988
formate-DH-gamm: formate dehydrogenase, gamma subunit.
       0.423
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.421
treS
treS_nterm: trehalose synthase.
 
  
 0.412
DM40_5233
Hypothetical protein.
  
     0.411
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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