STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4022Type II/IV secretion system family protein. (596 aa)    
Predicted Functional Partners:
DM40_4023
Type II secretion system (T2SS), F family protein.
 
 
 0.987
DM40_1283
Type II secretion system (T2SS), F family protein.
 
 
 0.963
gspF
gspF: type II secretion system protein F.
 
 
 0.963
gspG
typeII_sec_gspG: type II secretion system protein G.
 
 
 0.889
DM40_1282
Type IV leader peptidase family protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.880
pilQ
IV_pilus_PilQ: type IV pilus secretin PilQ family protein.
 
 
 
 0.843
DM40_4019
pilus_B_mal_scr: type IVB pilus formation outer membrane protein, R64 PilN family.
 
  
 0.835
gspL
typeII_sec_gspL: type II secretion system protein L.
  
 
 0.821
DM40_4020
Pilin accessory family protein.
     
 0.791
DM40_4018
Toxin co-regulated pilus biosynthesis Q family protein.
 
     0.787
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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