STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4023Type II secretion system (T2SS), F family protein. (358 aa)    
Predicted Functional Partners:
DM40_4022
Type II/IV secretion system family protein.
 
 
 0.987
DM40_4019
pilus_B_mal_scr: type IVB pilus formation outer membrane protein, R64 PilN family.
 
  
 0.960
gspE
Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.903
DM40_1284
Type II/IV secretion system family protein.
 
 
 0.892
DM40_4018
Toxin co-regulated pilus biosynthesis Q family protein.
 
     0.892
DM40_4020
Pilin accessory family protein.
     
 0.823
DM40_4021
Type IV pilus biogenesis family protein.
       0.812
DM40_4818
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
 
  
 0.756
DM40_4028
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
 
  
 0.752
gspG
typeII_sec_gspG: type II secretion system protein G.
 
  
 0.726
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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