STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4024Bundlin family protein. (184 aa)    
Predicted Functional Partners:
DM40_4025
Putative pilM, PilM.
       0.619
DM40_4020
Pilin accessory family protein.
       0.568
DM40_4023
Type II secretion system (T2SS), F family protein.
       0.541
DM40_4022
Type II/IV secretion system family protein.
       0.538
DM40_4021
Type IV pilus biogenesis family protein.
       0.531
DM40_4018
Toxin co-regulated pilus biosynthesis Q family protein.
       0.523
DM40_4019
pilus_B_mal_scr: type IVB pilus formation outer membrane protein, R64 PilN family.
       0.523
DM40_4026
Hypothetical protein; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein.
       0.473
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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