STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4028type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family. (589 aa)    
Predicted Functional Partners:
DM40_4031
Bacterial type II/III secretion system short domain protein.
 
  
 
0.957
DM40_4037
fliQ_rel_III: type III secretion, HrpO family protein.
 
 
 0.938
DM40_4045
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
 
 
 0.929
DM40_4814
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
 
 
 0.918
epaP
yscR: type III secretion apparatus protein, YscR/HrcR family.
 
 
 0.915
DM40_4818
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
  
  
 
0.915
epaR
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
 
 0.914
bcscS
fliQ_rel_III: type III secretion, HrpO family protein.
 
 
 0.845
epaR-2
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
 
 0.835
epaP-2
yscR: type III secretion apparatus protein, YscR/HrcR family.
 
 
 0.821
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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