STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4057Iron-containing alcohol dehydrogenase. (355 aa)    
Predicted Functional Partners:
pnpC
pnpC.
  
 0.994
pcaJ
3-oxoadipate CoA-transferase subunit B.
 
 
 0.941
pcaI
3-oxoadipate CoA-transferase subunit A.
 
 
 0.934
DM40_5769
Dienelactone hydrolase family protein.
 
 
 0.928
pcaD
protocat_pcaD: 3-oxoadipate enol-lactonase.
  
  
 0.921
DM40_3883
Chlorophyllase family protein.
  
 
 0.907
DM40_5452
Dienelactone hydrolase family protein.
  
 
 0.907
DM40_981
Dienelactone hydrolase family protein.
  
 
 0.907
DM40_4056
Aldehyde dehydrogenase family protein.
  
 0.905
DM40_5389
Alpha/beta hydrolase fold family protein.
     
 0.900
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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