Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DM40_4086ABC transporter family protein. (474 aa)    
Predicted Functional Partners:
DM40_4088
Type II secretion system (T2SS), F family protein.
 
  
 0.982
DM40_4085
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
 
  
 0.978
DM40_4087
Type II secretion system (T2SS), F family protein.
 
  
 0.973
DM40_4083
Bacterial type II and III secretion system family protein; Belongs to the bacterial secretin family.
 
  
 0.959
cpaB-2
pilus_cpaB: Flp pilus assembly protein CpaB.
 
  
 0.930
DM40_4090
tadE-like family protein.
 
    0.928
DM40_2151
Type II secretion system (T2SS), F family protein.
 
  
 0.894
DM40_5752
Type II secretion system (T2SS), F family protein.
 
  
 0.888
DM40_5753
Type II secretion system (T2SS), F family protein.
 
  
 0.888
DM40_2150
Type II secretion system (T2SS), F family protein.
 
  
 0.887
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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