STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4093Glycosyl transferase 2 family protein. (358 aa)    
Predicted Functional Partners:
DM40_2454
Dolichyl-phosphate-mannose-mannosyltransferase family protein.
 
  
 0.837
DM40_2460
Polysaccharide deacetylase family protein.
 
  
 0.597
wecE
ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase family protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.544
DM40_3806
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.533
DM40_3835
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.533
DM40_4242
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.533
DM40_4091
Hypothetical protein.
  
    0.532
DM40_2456
Beta-eliminating lyase family protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.512
kynA
Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
    
   0.464
DM40_2455
Small Multidrug Resistance family protein.
  
  
 0.445
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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