Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DM40_4099Hypothetical protein. (254 aa)    
Predicted Functional Partners:
gspL
typeII_sec_gspL: type II secretion system protein L.
  
     0.770
DM40_1563
Polysaccharide biosynthesis family protein.
  
     0.762
DM40_830
Type II secretion system (T2SS), M family protein.
  
     0.758
DM40_1482
EAL domain protein.
  
     0.753
DM40_833
Hypothetical protein; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein.
  
     0.749
DM40_4380
mltA-interacting MipA family protein.
  
     0.732
DM40_2604
Tetratricopeptide repeat family protein.
  
     0.721
otsB
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.714
DM40_2870
Cobalt uptake substrate-specific transmembrane region family protein.
  
     0.703
DM40_2955
PRC-barrel domain protein.
  
     0.692
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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