STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4130Carboxymuconolactone decarboxylase family protein. (184 aa)    
Predicted Functional Partners:
pcaC
decarb_PcaC: 4-carboxymuconolactone decarboxylase.
    
 0.945
DM40_2440
Carboxymuconolactone decarboxylase family protein.
    
 0.912
DM40_3704
Carboxymuconolactone decarboxylase family protein.
    
 0.912
DM40_4129
Aminotransferase class I and II family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.692
DM40_4128
Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein.
       0.657
DM40_4127
ABC transporter family protein.
  
    0.611
DM40_4126
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein.
  
    0.610
DM40_4125
TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein.
  
    0.470
lpxO
aspartyl/Asparaginyl beta-hydroxylase family protein.
       0.441
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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