STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpxOaspartyl/Asparaginyl beta-hydroxylase family protein. (299 aa)    
Predicted Functional Partners:
DM40_3994
Hypothetical protein; Pili assembly chaperone PapD, C-terminal domain protein.
  
     0.529
DM40_3993
papC N-terminal domain protein.
  
    0.528
DM40_4128
Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein.
 
     0.522
DM40_3547
papC N-terminal domain protein.
  
    0.513
DM40_64
Outer membrane usher family protein.
  
    0.508
mopII
Mop: molybdenum-pterin binding domain protein.
  
     0.461
DM40_4132
Hypothetical protein.
       0.461
DM40_3546
Hypothetical protein; Pili assembly chaperone PapD, C-terminal domain protein.
  
     0.452
DM40_4130
Carboxymuconolactone decarboxylase family protein.
       0.441
DM40_63
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein.
  
     0.426
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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