STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4136Transcriptional regulator, CopG family. (72 aa)    
Predicted Functional Partners:
DM40_4135
PIN domain protein.
 
 
   0.973
DM40_772
Hypothetical protein.
  
 
 0.805
DM40_4488
PIN domain protein.
 
 
   0.753
DM40_914
Putative nucleic acid-binding protein, contains PIN domain.
   
   0.715
DM40_4075
Antibiotic biosynthesis monooxygenase family protein.
  
     0.699
DM40_1930
Putative endonuclease.
  
     0.619
DM40_3957
Putative transmembrane protein.
  
     0.559
DM40_4099
Hypothetical protein.
  
     0.513
DM40_739
Hypothetical protein.
  
     0.504
DM40_2191
Putative membrane protein.
  
     0.488
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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