STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_415snoaL-like domain protein. (127 aa)    
Predicted Functional Partners:
DM40_416
Lipid A 3-O-deacylase family protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
 
     0.742
DM40_5671
Cytochrome c family protein.
  
     0.628
DM40_1473
Putative prepilin-type cleavage/methylation-like protein.
  
     0.617
DM40_4507
Calcineurin-like phosphoesterase family protein.
  
     0.598
DM40_514
Hypothetical protein.
  
     0.597
DM40_645
traB family protein.
  
     0.586
DM40_3508
nmrA-like family protein.
 
    0.580
DM40_1747
fecR family protein.
  
     0.568
DM40_1433
Hypothetical protein.
  
     0.562
DM40_333
Nitr_red_assoc: conserved hypothetical family protein.
  
     0.549
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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