STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4152A circularly permuted ATPgrasp family protein. (471 aa)    
Predicted Functional Partners:
DM40_4153
Hypothetical protein; A predicted alpha-helical domain with a conserved ER motif family protein.
  
 0.981
DM40_4154
Transglutaminase-like superfamily protein.
 
  
 0.928
ybdK
Carboxylate-amine ligase YbdK; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
   
  0.897
DM40_4155
Transglutaminase-like superfamily protein.
 
    0.885
DM40_4157
Transglutaminase-like superfamily protein.
 
  
 0.876
DM40_4156
A circularly permuted ATPgrasp family protein.
 
  
0.813
DM40_5359
Hypothetical protein.
    
  0.507
gshB
Glut_syn: glutathione synthase; Belongs to the prokaryotic GSH synthase family.
    
  0.491
DM40_1366
glu/Leu/Phe/Val dehydrogenase, dimerization domain protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
  0.469
DM40_3524
Beta-eliminating lyase family protein.
    
  0.463
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.