STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4164Nucleotidyl transferase family protein. (255 aa)    
Predicted Functional Partners:
aepY
ppyr-DeCO2ase: phosphonopyruvate decarboxylase.
 
     0.965
aepX
PEP_mutase: phosphoenolpyruvate phosphomutase.
 
    0.962
DM40_4166
2OG-Fe(II) oxygenase superfamily protein.
 
     0.925
DM40_4167
CDP-alcohol phosphatidyltransferase family protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.925
phnW-2
2-aminoethylphosphonate aminotransferase family protein; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily.
 
    0.923
DM40_4165
hpnL: membrane family protein.
 
     0.922
flgK
flgK_ends: flagellar hook-associated protein FlgK.
  
    0.789
flgL
flagell_flgL: flagellar hook-associated protein 3.
  
    0.763
DM40_1838
hpnL: membrane family protein.
 
     0.558
serB
serB: phosphoserine phosphatase SerB.
  
  
 0.529
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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