STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_41784-hydroxyproline epimerase; Belongs to the proline racemase family. (310 aa)    
Predicted Functional Partners:
DM40_4179
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
  
 0.995
DM40_4181
FAD binding domain protein.
 
  
  0.984
DM40_4180
2Fe-2S iron-sulfur cluster binding domain protein.
 
  
  0.974
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.832
dapA-3
Dihydrodipicolinate synthase.
 
   
 0.737
DM40_3166
Aldehyde dehydrogenase family protein.
  
 
 
 0.701
DM40_5654
Aldehyde dehydrogenase family protein.
  
 
 
 0.675
DM40_4176
Aldehyde dehydrogenase family protein.
  
 
 
 0.670
DM40_5262
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
   
 0.549
DM40_3157
Helix-turn-helix domain protein.
 
     0.510
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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