STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_41784-hydroxyproline epimerase; Belongs to the proline racemase family. (310 aa)    
Predicted Functional Partners:
DM40_4179
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
  
  0.996
DM40_4181
FAD binding domain protein.
 
  
  0.986
DM40_4180
2Fe-2S iron-sulfur cluster binding domain protein.
 
  
  0.985
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.954
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
    
 0.876
DM40_4351
Ornithine cyclodeaminase/mu-crystallin family protein.
 
  
 0.742
dapA-3
Dihydrodipicolinate synthase.
 
    0.706
DM40_3166
Aldehyde dehydrogenase family protein.
 
 
  0.680
DM40_5654
Aldehyde dehydrogenase family protein.
 
 
  0.672
DM40_4176
Aldehyde dehydrogenase family protein.
 
 
  0.667
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.