STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydACytochrome d ubiquinol oxidase subunit 1. (526 aa)    
Predicted Functional Partners:
cydB-2
cydB: cytochrome d ubiquinol oxidase, subunit II.
 
 0.993
cydB-4
cydB: cytochrome d ubiquinol oxidase, subunit II.
 
 
 0.977
cydB
cydB: cytochrome d ubiquinol oxidase, subunit II.
 
 0.974
cydB-3
cydB: cytochrome d ubiquinol oxidase, subunit II.
 
 
 0.970
DM40_3263
Bacterial Cytochrome Ubiquinol Oxidase family protein.
  
  
 
0.969
DM40_5250
Bacterial Cytochrome Ubiquinol Oxidase family protein.
  
  
 
0.951
cydX
cyd_oper_ybgT: cyd operon protein YbgT.
 
 
 0.907
DM40_418
Hypothetical protein.
       0.799
DM40_2336
cyd_oper_ybgT: cyd operon protein YbgT.
  
 
 0.656
rpoH
Alternative sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
     
 0.462
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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