STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4203D-aminopeptidase family protein. (275 aa)    
Predicted Functional Partners:
DM40_4202
Peptidase S58 family protein.
 
   
 0.936
DM40_4200
Binding--dependent transport system inner membrane component family protein.
 
  
 0.871
DM40_4201
Binding--dependent transport system inner membrane component family protein.
 
  
 0.869
DM40_4199
Bacterial extracellular solute-binding s, 5 Middle family protein.
 
     0.798
DM40_4196
SIS domain protein.
 
     0.731
DM40_4328
Peptidase S58 family protein.
 
   
 0.577
iaaA
Isoaspartyl peptidase.
 
     0.555
nikE-2
nickel_nikE: nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily.
 
   
 0.504
DM40_4204
Cupin domain protein.
       0.476
DM40_2621
LD-carboxypeptidase family protein.
 
    0.412
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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