STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaHProtocat_beta: protocatechuate 3,4-dioxygenase, beta subunit. (235 aa)    
Predicted Functional Partners:
pcaG
Protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit.
 
0.999
pcaB
protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.995
pobA
Pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase.
 
  
 0.990
pcaC
decarb_PcaC: 4-carboxymuconolactone decarboxylase.
 
 
 0.878
DM40_3704
Carboxymuconolactone decarboxylase family protein.
 
 
 0.736
pcaD
protocat_pcaD: 3-oxoadipate enol-lactonase.
 
  
 0.732
DM40_3155
Xylose isomerase-like TIM barrel family protein.
 
  
 0.727
DM40_5133
2Fe-2S iron-sulfur cluster binding domain protein.
 
 
 0.691
DM40_1176
Carboxymuconolactone decarboxylase family protein.
 
 
 0.636
DM40_126
2Fe-2S iron-sulfur cluster binding domain protein.
  
 
 0.631
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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