STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4217Hypothetical protein; Glycosyl hydrolase family 3 C-terminal domain protein. (733 aa)    
Predicted Functional Partners:
lsdA
Levansucrase; Belongs to the glycosyl hydrolase 68 family.
  
  
  0.954
DM40_4194
Glycosyl hydrolases 31 family protein; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.881
glk
Glk: glucokinase; Belongs to the bacterial glucokinase family.
  
 
 0.664
nagZ
Hypothetical protein; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
  
  
 0.658
DM40_2005
Glycosyl hydrolases 8 family protein; Belongs to the glycosyl hydrolase 8 (cellulase D) family.
 
  
 0.647
chb
Chitobiase.
 
  
 0.645
DM40_4292
Hypothetical protein; Glycosyl hydrolases family 32 N-terminal domain protein; Belongs to the glycosyl hydrolase 32 family.
  
 
 0.621
DM40_4294
Bacterial regulatory s, lacI family protein.
 
  
  0.607
DM40_3375
Beta-galactosidase.
 
  
 0.581
glgE
Alpha amylase, catalytic domain protein; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
   
 
 0.579
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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