STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmhBgmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase family protein. (190 aa)    
Predicted Functional Partners:
gmhA
Phosphoheptose isomerase.
 
 0.997
DM40_4221
Nucleotidyl transferase family protein.
 0.983
DM40_4219
D-glycero-D-manno-heptose 1-phosphate kinase.
 
 
 0.976
rfaE-3
Bifunctional protein RfaE; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
  
 0.969
DM40_994
SIS domain protein.
 
 0.932
rfaE
Domain I; rfaE_dom_I: bifunctional protein RfaE, domain I.
 
  
 0.915
rfaE-2
Domain I; rfaE_dom_I: bifunctional protein RfaE, domain I.
 
  
 0.914
DM40_4170
Helix-hairpin-helix domain protein.
    
 0.882
dpx
Family X DNA polymerase.
    
 0.882
ligD
NHEJ_ligase_prk: DNA ligase D.
   
 0.877
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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