STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4229Alpha/beta hydrolase fold family protein. (576 aa)    
Predicted Functional Partners:
DM40_4237
Amino acid--[acyl-carrier-protein] ligase.
 
     0.782
DM40_4236
Hypothetical protein.
 
     0.777
DM40_4239
Aminoacyl carrier protein.
 
     0.757
DM40_4238
Hypothetical protein; acyl-CoA dehydrogenase, C-terminal domain protein.
 
     0.709
DM40_4235
Putative beta-mannosidase.
 
     0.635
DM40_4230
Hypothetical protein.
       0.618
gspL
typeII_sec_gspL: type II secretion system protein L.
  
     0.597
DM40_4099
Hypothetical protein.
  
     0.547
DM40_2278
Formyl transferase family protein.
  
     0.530
DM40_2604
Tetratricopeptide repeat family protein.
  
     0.529
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.