STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4229Alpha/beta hydrolase fold family protein. (576 aa)    
Predicted Functional Partners:
DM40_4237
Amino acid--[acyl-carrier-protein] ligase.
 
     0.784
DM40_4236
Hypothetical protein.
 
     0.776
DM40_4239
Aminoacyl carrier protein.
 
     0.752
DM40_4235
Putative beta-mannosidase.
 
  
  0.727
DM40_4238
Hypothetical protein; acyl-CoA dehydrogenase, C-terminal domain protein.
 
     0.703
DM40_4230
Hypothetical protein.
       0.618
gspL
typeII_sec_gspL: type II secretion system protein L.
  
     0.597
dltA
D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1.
 
 
  0.550
DM40_4099
Hypothetical protein.
  
     0.547
DM40_2278
Formyl transferase family protein.
  
     0.530
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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