STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
aldalaDH: alanine dehydrogenase; Belongs to the AlaDH/PNT family. (371 aa)    
Predicted Functional Partners:
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.966
alr-2
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.966
pntB
NAD(P) transhydrogenase subunit beta.
     0.935
DM40_2452
Aminotransferase class-V family protein.
     
 0.909
DM40_1
Aminotransferase class I and II family protein.
     
  0.900
DM40_3620
Aminotransferase class I and II family protein.
     
  0.900
DM40_1030
Malic enzyme, NAD binding domain protein; Belongs to the malic enzymes family.
  
 
 0.860
DM40_1335
Malic enzyme, NAD binding domain protein.
  
 
 0.860
DM40_4997
Malic enzyme, NAD binding domain protein.
  
 
 0.860
pyk
Pyruv_kin: pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.838
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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