STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4247Gluconate 2-dehydrogenase subunit 3 family protein. (246 aa)    
Predicted Functional Partners:
DM40_4248
Gluconate 2-dehydrogenase flavoprotein.
 0.998
DM40_4249
Gluconate 2-dehydrogenase cytochrome c subunit.
 
  
 0.951
ghrB
Glyoxylate/hydroxypyruvate reductase B; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.936
DM40_1766
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
  
 
 0.916
DM40_4970
NHL repeat family protein.
     
 0.912
DM40_1361
Therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family protein.
     
 0.905
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
  
  
 0.874
DM40_4560
FAD binding domain protein.
 
 
 0.834
DM40_4395
Cytochrome c family protein.
 
  
 0.763
DM40_5116
GMC oxidoreductase family protein.
 
 
 0.763
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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