STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4253NAD dependent epimerase/dehydratase family protein. (399 aa)    
Predicted Functional Partners:
dltA
D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1.
 
 
 0.819
DM40_1371
Autotrans_barl: outer membrane autotransporter barrel domain protein.
  
     0.764
DM40_1514
Hypothetical protein.
  
     0.757
DM40_3694
Hypothetical protein.
  
     0.747
DM40_739
Hypothetical protein.
  
     0.741
DM40_3957
Putative transmembrane protein.
  
     0.736
DM40_3561
Bacterial regulatory s, luxR family protein.
  
     0.726
DM40_4461
BNR repeat-like domain protein.
  
     0.724
DM40_4796
Putative cheA signal transduction histidine kinase.
  
     0.724
pgaA
PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA.
  
     0.706
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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