STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4274Cytochrome c family protein. (394 aa)    
Predicted Functional Partners:
ctaD-2
ctaD_CoxA: cytochrome c oxidase, subunit I.
  
 
 0.924
DM40_5109
Cytochrome c oxidase subunit III family protein.
  
 
 0.924
coxB-2
coxB: cytochrome c oxidase, subunit II.
  
 
 0.890
coxB-3
coxB: cytochrome c oxidase, subunit II.
  
 
 0.890
petA
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.860
DM40_4277
NMT1-like family protein.
 
     0.858
DM40_1159
Hypothetical protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.817
DM40_4276
Binding--dependent transport system inner membrane component family protein.
 
     0.766
DM40_5735
gtrA-like family protein.
  
     0.735
DM40_4273
ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.
 
     0.730
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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