DM40_4275 protein (Burkholderia cenocepacia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

DM40_4275

ABC transporter family protein. (268 aa)

Predicted Functional Partners:

DM40_4276

0.995

DM40_2193

0.977

DM40_5076

0.974

DM40_4277

0.970

DM40_807

0.970

DM40_4273

0.919

DM40_4279

0.897

DM40_484

0.880

DM40_5320

0.867

DM40_4458

0.831

Your Current Organism:

Burkholderia cenocepacia

NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
DM40_2193	DM40_4273	Binding--dependent transport system inner membrane component family protein.	ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.	0.924
DM40_2193	DM40_4275	Binding--dependent transport system inner membrane component family protein.	ABC transporter family protein.	0.977
DM40_2193	DM40_4277	Binding--dependent transport system inner membrane component family protein.	NMT1-like family protein.	0.773
DM40_2193	DM40_4279	Binding--dependent transport system inner membrane component family protein.	Luciferase-like monooxygenase family protein.	0.887
DM40_2193	DM40_4458	Binding--dependent transport system inner membrane component family protein.	ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.	0.924
DM40_2193	DM40_5076	Binding--dependent transport system inner membrane component family protein.	Binding--dependent transport system inner membrane component family protein.	0.401
DM40_2193	DM40_5320	Binding--dependent transport system inner membrane component family protein.	Binding--dependent transport system inner membrane component family protein.	0.435
DM40_2193	DM40_807	Binding--dependent transport system inner membrane component family protein.	Binding--dependent transport system inner membrane component family protein.	0.409
DM40_4273	DM40_2193	ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.	Binding--dependent transport system inner membrane component family protein.	0.924
DM40_4273	DM40_4275	ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.	ABC transporter family protein.	0.919
DM40_4273	DM40_4276	ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.	Binding--dependent transport system inner membrane component family protein.	0.994
DM40_4273	DM40_4277	ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.	NMT1-like family protein.	0.981
DM40_4273	DM40_4279	ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.	Luciferase-like monooxygenase family protein.	0.944
DM40_4273	DM40_4458	ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.	ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.	0.916
DM40_4273	DM40_484	ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.	Binding--dependent transport system inner membrane component family protein.	0.871
DM40_4273	DM40_5076	ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.	Binding--dependent transport system inner membrane component family protein.	0.861
DM40_4273	DM40_5320	ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.	Binding--dependent transport system inner membrane component family protein.	0.819
DM40_4273	DM40_807	ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.	Binding--dependent transport system inner membrane component family protein.	0.801
DM40_4275	DM40_2193	ABC transporter family protein.	Binding--dependent transport system inner membrane component family protein.	0.977
DM40_4275	DM40_4273	ABC transporter family protein.	ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.	0.919

page 1 of 5

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About