STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4283Rhodanese-like domain protein. (541 aa)    
Predicted Functional Partners:
DM40_3576
Aminotransferase class-V family protein.
  
 0.947
DM40_4518
FAD binding domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
   
 0.929
DM40_4282
Cysteine dioxygenase type I.
 
  
 0.928
ethe1
ETHE1, mitochondrial domain protein.
  
 0.920
DM40_177
Iron/manganese superoxide dismutase, alpha-hairpin domain protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.916
DM40_126
2Fe-2S iron-sulfur cluster binding domain protein.
  
 
 0.898
DM40_5133
2Fe-2S iron-sulfur cluster binding domain protein.
  
 
 0.898
DM40_2359
FAD dependent oxidoreductase family protein.
   
 0.894
tusA
Sulfurtransferase TusA family protein; Belongs to the sulfur carrier protein TusA family.
  
 
 0.865
DM40_352
Hypothetical protein; FAD linked oxidase, C-terminal domain protein.
    
 0.856
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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