STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lsdALevansucrase; Belongs to the glycosyl hydrolase 68 family. (526 aa)    
Predicted Functional Partners:
DM40_4217
Hypothetical protein; Glycosyl hydrolase family 3 C-terminal domain protein.
  
  
  0.954
nagE
PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component.
  
 
 0.936
DM40_4292
Hypothetical protein; Glycosyl hydrolases family 32 N-terminal domain protein; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.936
ptsP
PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family.
  
 
 0.804
DM40_4194
Glycosyl hydrolases 31 family protein; Belongs to the glycosyl hydrolase 31 family.
     
 0.785
DM40_3714
Phosphotransferase enzyme family protein.
  
     0.758
DM40_4822
Bacterial regulatory s, luxR family protein.
  
    0.750
DM40_129
Hypothetical protein.
  
     0.729
bcsE
cellulose_bcsE: cellulose biosynthesis protein BcsE.
  
     0.729
DM40_5812
Hypothetical protein.
  
     0.723
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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