STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4351Ornithine cyclodeaminase/mu-crystallin family protein. (311 aa)    
Predicted Functional Partners:
DM40_4354
Proline racemase; Belongs to the proline racemase family.
 
  
 0.982
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.951
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 
 0.925
DM40_1511
Ornithine cyclodeaminase/mu-crystallin family protein.
  
  
  0.850
eutC
ectoine_eutC: ectoine utilization protein EutC.
  
  
  0.829
DM40_4175
malate/L-lactate dehydrogenase family protein; Belongs to the LDH2/MDH2 oxidoreductase family.
     
 0.803
DM40_5589
malate/L-lactate dehydrogenase family protein.
     
 0.803
DM40_4178
4-hydroxyproline epimerase; Belongs to the proline racemase family.
 
  
 0.742
DM40_3654
Ornithine cyclodeaminase/mu-crystallin family protein.
  
  
 
0.616
cysM
cysM: cysteine synthase B; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 
 0.543
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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