STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4356pilZ domain protein. (291 aa)    
Predicted Functional Partners:
DM40_5378
cheR methyltransferase, all-alpha domain protein.
  
  
 0.899
fliS
fliS: flagellar protein FliS.
  
  
 0.779
DM40_945
Flagellar hook-associated family protein.
  
  
 0.750
DM40_625
flgN family protein.
  
  
 0.628
flgK
flgK_ends: flagellar hook-associated protein FlgK.
  
  
 0.600
flgM
flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM.
  
  
 0.561
DM40_4355
Penicillin binding transpeptidase domain protein.
       0.556
DM40_3752
motA/TolQ/ExbB proton channel family protein.
  
 
 0.527
motA
motA1: flagellar motor stator protein MotA.
  
 
 0.527
DM40_4117
HAMP domain protein.
  
  
 0.524
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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