STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4374Hypothetical protein. (192 aa)    
Predicted Functional Partners:
DM40_3858
Carbohydrate-binding module 48 family protein; Belongs to the glycosyl hydrolase 13 family.
  
    0.570
treS
treS_nterm: trehalose synthase.
  
    0.562
treZ
trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase.
  
    0.539
DM40_4373
Hypothetical protein.
  
    0.537
glgX
glgX_debranch: glycogen debranching enzyme GlgX; Belongs to the glycosyl hydrolase 13 family.
   
  
 0.508
DM40_5700
Eukaryotic DNA topoisomerase I, catalytic core family protein.
 
    0.488
DM40_5046
Iron-containing redox enzyme family protein.
   
  
 0.447
DM40_5400
NHL repeat family protein.
  
     0.409
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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