STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4380mltA-interacting MipA family protein. (292 aa)    
Predicted Functional Partners:
DM40_4099
Hypothetical protein.
  
     0.732
DM40_4622
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein.
  
     0.659
DM40_530
X-Pro dipeptidyl-peptidase family protein.
  
     0.634
DM40_830
Type II secretion system (T2SS), M family protein.
  
     0.628
DM40_4381
VRR-NUC domain protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
 
     0.622
gspL
typeII_sec_gspL: type II secretion system protein L.
  
     0.617
DM40_3610
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein.
  
     0.597
DM40_1675
Hypothetical protein.
  
     0.583
DM40_4711
Hemagluttinin repeat family protein.
  
     0.568
DM40_4382
DEAD_2 family protein.
 
     0.552
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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