STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4383Bacterial transcriptional regulator family protein. (257 aa)    
Predicted Functional Partners:
DM40_1861
Bacterial transcriptional regulator family protein.
  
     0.771
DM40_5569
Bacterial transcriptional regulator family protein.
  
     0.770
DM40_3295
Bacterial transcriptional regulator family protein.
  
     0.762
DM40_5501
Bacterial transcriptional regulator family protein.
  
     0.743
uca
Urea_carbox: urea carboxylase.
  
 
  0.742
DM40_4973
Bacterial transcriptional regulator family protein.
  
     0.712
DM40_513
Bacterial transcriptional regulator family protein.
  
     0.666
DM40_4313
Bacterial transcriptional regulator family protein.
  
     0.527
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
    
 0.509
DM40_4344
Aminotransferase class I and II family protein.
     
  0.499
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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