STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4389Hypothetical protein; Plasmid replication region DNA-binding N-term family protein. (342 aa)    
Predicted Functional Partners:
DM40_77
scpA/B family protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.897
DM40_5378
cheR methyltransferase, all-alpha domain protein.
   
 0.846
DM40_3997
Hpt domain protein.
   
  0.688
DM40_3998
Hpt domain protein.
   
  0.688
DM40_5292
GAF domain protein.
  
  0.688
DM40_5705
His Kinase A domain protein.
   
  0.681
DM40_5341
Sensory box protein.
    
  0.640
DM40_1718
Histone deacetylase domain protein.
    
 0.639
DM40_1908
Histone deacetylase domain protein.
    
 0.639
DM40_4906
Rhs_assc_core: RHS repeat-associated core domain protein.
  
 
 0.626
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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