STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4393[2Fe-2S] binding domain protein. (151 aa)    
Predicted Functional Partners:
DM40_4394
Molybdopterin-binding domain of aldehyde dehydrogenase family protein.
 
 0.990
DM40_4802
Molybdopterin-binding domain of aldehyde dehydrogenase family protein.
 
 0.962
DM40_551
Molybdopterin-binding domain of aldehyde dehydrogenase family protein.
 
 0.955
DM40_5294
FAD binding domain in molybdopterin dehydrogenase family protein.
 
 0.949
DM40_5850
Molybdopterin-binding domain of aldehyde dehydrogenase family protein.
 
 0.947
xdhB
xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit.
 
     0.867
DM40_552
FAD binding domain in molybdopterin dehydrogenase family protein.
 
 
 0.856
DM40_661
xdhC and CoxI family protein.
 
  
 0.828
urtA
Periplasmic binding domain protein.
   
    0.813
DM40_4780
mobA-like NTP transferase domain protein.
 
  
 0.792
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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