STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4413ABC-2 type transporter family protein. (374 aa)    
Predicted Functional Partners:
DM40_4411
RND_mfp: efflux transporter, RND family, MFP subunit.
 
  
 0.966
ccmA-5
ccmA: heme ABC exporter, ATP-binding protein CcmA.
 
 
0.942
DM40_4410
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
 
     0.699
DM40_4415
Metallo-beta-lactamase superfamily protein.
 
    0.514
DM40_4538
CAAX protease self-immunity family protein.
   
  
 0.498
DM40_812
ABC transporter family protein.
  
 
 0.482
DM40_4414
Hypothetical protein.
       0.471
nodI
Nodulation ABC transporter NodI; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
 
 
 0.457
DM40_1137
ABC transporter family protein.
 
 
 0.454
DM40_1550
ABC transporter family protein.
  
 
 0.454
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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