STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4413ABC-2 type transporter family protein. (374 aa)    
Predicted Functional Partners:
DM40_4411
RND_mfp: efflux transporter, RND family, MFP subunit.
 
  
 0.974
ccmA-5
ccmA: heme ABC exporter, ATP-binding protein CcmA.
 
  
0.925
DM40_4410
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
 
     0.705
DM40_4415
Metallo-beta-lactamase superfamily protein.
 
    0.523
DM40_4538
CAAX protease self-immunity family protein.
   
  
 0.500
DM40_4414
Hypothetical protein.
       0.471
DM40_1208
Nitroreductase family protein.
  
    0.431
bluB
bluB: 5,6-dimethylbenzimidazole synthase.
  
    0.431
DM40_4430
Nitroreductase family protein.
  
    0.431
DM40_4688
Nitroreductase family protein.
  
    0.431
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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