STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4418Poly-beta-hydroxybutyrate polymerase family protein. (606 aa)    
Predicted Functional Partners:
DM40_4417
Phosphate acetyl/butaryl transferase family protein.
 
 0.984
phbB
acAcCoA_reduct: acetoacetyl-CoA reductase family protein.
 
 
 0.922
phaZ
PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular family protein.
 
  
 0.840
ackA
ackA: acetate kinase.
  
 0.833
phaZ-3
PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular family protein.
 
  
 0.824
phaZ-2
PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular family protein.
 
  
 0.811
DM40_4416
Zinc-binding dehydrogenase family protein.
       0.773
DM40_4420
Hypothetical protein.
       0.773
phaR
PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.764
phbB-1
acetoacetyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.709
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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