STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4439Zeta toxin family protein. (533 aa)    
Predicted Functional Partners:
otsB
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.956
DM40_1932
Phosphoribosyl transferase domain protein.
 
  
 0.842
DM40_1301
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
    0.769
DM40_223
HAD-SF-IA-v3: HAD hydrolase, IA, variant 3 family protein.
  
    0.632
DM40_305
HAD-SF-IA-v1: HAD hydrolase, IA, variant 1 family protein.
  
    0.632
DM40_66
HAD-SF-IA-v1: HAD hydrolase, IA, variant 1 family protein.
  
    0.632
mgtA
ATPase-IIIB_Mg: magnesium-translocating P-type ATPase.
 
  
 0.605
DM40_4438
Universal stress family protein.
  
    0.580
DM40_4360
Sensory box protein.
  
    0.496
DM40_4426
Response regulator.
  
    0.496
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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