Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4525NMT1-like family protein. (347 aa)    
Predicted Functional Partners:
DM40_4524
Response regulator.
 
  
 0.962
cobA-3
cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase.
  
  
 0.894
DM40_4275
ABC transporter family protein.
 
 0.825
DM40_5319
ABC transporter family protein.
 
 0.794
DM40_4523
Hypothetical protein.
       0.773
tauB
ABC transporter family protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.
  
 0.767
DM40_4276
Binding--dependent transport system inner membrane component family protein.
 
 
 0.759
DM40_5077
ABC transporter family protein.
 
 0.758
DM40_808
ABC transporter family protein.
 
 0.757
DM40_2193
Binding--dependent transport system inner membrane component family protein.
 
 
 0.736
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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