STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4527Putative zinc-/iron-chelating domain protein. (261 aa)    
Predicted Functional Partners:
DM40_4526
Uracil DNA glycosylase superfamily protein.
       0.684
DM40_620
Hypothetical protein; Required for flagellar hook formation. May act as a scaffolding protein.
   
   0.674
DM40_4528
Helix-turn-helix domain protein.
       0.479
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
   
   0.464
cobA-3
cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase.
       0.426
DM40_4523
Hypothetical protein.
       0.426
DM40_4524
Response regulator.
       0.426
DM40_4525
NMT1-like family protein.
       0.426
DM40_945
Flagellar hook-associated family protein.
  
    0.410
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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