STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_454Macro domain protein. (174 aa)    
Predicted Functional Partners:
DM40_1629
Sigma-54 interaction domain protein.
      0.673
cmk
Cmk: cytidylate kinase.
 
      0.579
DM40_1718
Histone deacetylase domain protein.
    
  0.548
DM40_1908
Histone deacetylase domain protein.
    
  0.548
stcD
NADH:flavin oxidoreductase / NADH oxidase family protein.
  
 0.502
DM40_3914
Sir2 family protein.
 
 
 0.496
DM40_2359
FAD dependent oxidoreductase family protein.
  
 0.467
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
    
  0.462
gpsA
NAD-dependent glycerol-3-phosphate dehydrogenase family protein; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.454
DM40_3053
soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
  
 0.439
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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