STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4543Sodium/calcium exchanger family protein. (362 aa)    
Predicted Functional Partners:
DM40_1320
Hypothetical protein.
    
 
 0.653
mgtA
ATPase-IIIB_Mg: magnesium-translocating P-type ATPase.
  
 
 0.634
yihY
yihY_not_rbn: YihY family inner membrane domain protein.
  
    0.459
yihY-2
yihY_not_rbn: YihY family inner membrane domain protein.
  
    0.459
DM40_3950
N(G),N(G)-dimethylarginine dimethylaminohydrolase.
   
    0.449
DM40_177
Iron/manganese superoxide dismutase, alpha-hairpin domain protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
    0.447
yccA
Inhibitor of apoptosis-promoting Bax1 family protein; Belongs to the BI1 family.
   
  
 0.427
nirD
nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit.
      
 0.403
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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