STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4560FAD binding domain protein. (539 aa)    
Predicted Functional Partners:
DM40_4559
Cytochrome c family protein.
 
   0.999
DM40_4561
Membrane bound FAD containing D-sorbitol dehydrogenase family protein.
 
 
   0.999
DM40_4247
Gluconate 2-dehydrogenase subunit 3 family protein.
 
 0.896
DM40_5852
Cytochrome c family protein.
 
 
   0.881
DM40_5643
Hypothetical protein.
    
 0.874
gap
GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
     
 0.842
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
   
 
 0.833
pyk
Pyruv_kin: pyruvate kinase; Belongs to the pyruvate kinase family.
   
 
 0.832
DM40_3596
Aldehyde dehydrogenase family protein.
   
 
  0.832
glk
Glk: glucokinase; Belongs to the bacterial glucokinase family.
     
 0.831
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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