STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4564Hypothetical protein. (230 aa)    
Predicted Functional Partners:
rlpA
Rare lipoA family protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
 
 0.550
ygbF
Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
  
 0.536
tolA
tolA_full: protein TolA.
   
 
 0.492
DM40_1646
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
   
 
 0.492
DM40_2395
Hypothetical protein.
   
 
 0.492
DM40_25
Hypothetical protein.
   
 
 0.492
DM40_2843
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
   
 
 0.492
pbpC
PBP_1c: penicillin-binding protein 1C.
       0.447
DM40_4562
MG2 domain protein.
       0.439
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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